Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/47bf8a189bae02dcffab92fa51b64ae2cb52d31ccontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 47bf8a189bae02dcffab92fa51b64ae2cb52d31c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATTGCACAGTCACGAT-2448_A07, GCACGCTAGTTTCCGC-2448_A07, GTGTGCGGTGGTGAGA-2448_A07, AGTGCACGTCAACAAT-2448_A07, TGGACTAGTCACCAAA-2448_A07 (top 5 of 4597 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
47bf8a189bae02dcffab92fa51b64ae2cb52d31c.gz 1.76 GB f7659d845dc4d877ac45ac8bbd5ffb3f
47bf8a189bae02dcffab92fa51b64ae2cb52d31c.gz.tbi 1002.35 KB 8a9dc4bb401941ee59b991b29c67d094
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 0f49dcac9260789db2cd10e6f8922e00
statistics/