Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GAACCTTAGTAGCTTA-2058_B03, ACGACAAAGTAAGTGG-2058_B03, GCCTTAGAGGTTAGAG-2058_B03, ACGCCTAAGAGAGCCG-2058_B03, CCGCTAGCACCTATAG-2058_B03 (top 5 of 4969 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3.gz 1.06 GB 55418525e252b15e8b67ebbdf9f760c9
4820cadd20c95d2c6b0d2c0a5bcc69010cb360f3.gz.tbi 798.72 KB c57e250148a21715fe6774e8f0b34937
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 18546c21db79d0bc07ab4a8929b0ea7f
statistics/