Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/4825c56cf43477aec2aa98bfb72a76d4aeb0435bcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 4825c56cf43477aec2aa98bfb72a76d4aeb0435b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AAATGCCTCCTGGTCT-2517_C05, GCCAATTAGGCTAATC-2517_C05, GGAAACTCATAAAGCA-2517_C05, GAACCAAAGTATTGTG-2517_C05, CTAGTAGGTCCCGGAA-2517_C05 (top 5 of 5243 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
4825c56cf43477aec2aa98bfb72a76d4aeb0435b.gz 2.5 GB 29bc0c32de69ae1d469ec51f02cc7da2
4825c56cf43477aec2aa98bfb72a76d4aeb0435b.gz.tbi 1.25 MB 25d6e4feb18c8b40e4558159ad8890da
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB f0604101e9908d1b4fd8cb02250a0977
statistics/