Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/499451f82ed33e14bde0f96849d3210c04da3137content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 499451f82ed33e14bde0f96849d3210c04da3137
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTTCTTGCACAGGGAC-1110_B07, ACGGTACGTGCGCATG-1110_B07, GGTATTTCAATACTGT-1110_B07, GTTTCAGCAAGGTCCT-1110_B07, TGTCATAAGGGATGCG-1110_B07 (top 5 of 1700 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
499451f82ed33e14bde0f96849d3210c04da3137.gz 386.64 MB ee07b4db2c9619336ec6cfa4c1de94e7
499451f82ed33e14bde0f96849d3210c04da3137.gz.tbi 595.39 KB 2cf590f76105fc81238c01a66c9df332
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 39715a7423714e5e46c2ebce2cba06b6
statistics/