Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/4ab5f6ecc6d6d33becb6d779f2eb2827070e7de8content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 4ab5f6ecc6d6d33becb6d779f2eb2827070e7de8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGTGCTGCATGTTGCA-2013_B01, GGGATTAAGCTAATCA-2013_B01, AAGCCACGTATCTGGA-2013_B01, TGCTTGCTCAGTGAAG-2013_B01, TAGGAGGGTCCTAACT-2013_B01 (top 5 of 3386 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
4ab5f6ecc6d6d33becb6d779f2eb2827070e7de8.gz 1.32 GB c79eb3aaa62678293dc717141942b6e2
4ab5f6ecc6d6d33becb6d779f2eb2827070e7de8.gz.tbi 880.67 KB 44b08d75f76833a3bf70b88e2d0cf36f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 7df80707c66b83254ae0ce4abbf19443
statistics/