Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/4e40ad6f1d330bc0aa32290a1e30e9159d3701c3content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 4e40ad6f1d330bc0aa32290a1e30e9159d3701c3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCGGTTAAGGCTGTGC-2317_B05, GAATTTGTCCCGTTAC-2317_B05, CGAAGCCTCCGCACAA-2317_B05, AGTCAAGAGGGATGCG-2317_B05, TATCCAGCACTAGCGT-2317_B05 (top 5 of 5722 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
4e40ad6f1d330bc0aa32290a1e30e9159d3701c3.gz 2.73 GB 92ca9e35be9fd4cce9dec9f2f160f16f
4e40ad6f1d330bc0aa32290a1e30e9159d3701c3.gz.tbi 1.3 MB 55a92db18a6db2b61854d4ffb4e02948
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB a0cef6ca7902a0a2e5a2657f3194b25c
statistics/