Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5184c19b9f90b2d0329ec6d7e4ba3febe51999eecontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5184c19b9f90b2d0329ec6d7e4ba3febe51999ee
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTTCCTGAGGCATTGT-897_E03, CGGCCATAGAGGAAGG-897_E03, ATCCAACAGGTTTACA-897_E03, TGAGGCACAGGCTAGA-897_E03, TGAGGAGGTTTGGCGG-897_E03 (top 5 of 1146 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
5184c19b9f90b2d0329ec6d7e4ba3febe51999ee.gz 251.29 MB 88880eb3056423d6bdc73dc55a41f4d5
5184c19b9f90b2d0329ec6d7e4ba3febe51999ee.gz.tbi 565.25 KB ea4819d64324fc1f50ad8d025e970467
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 2465ca9834915466ae0eb86515195312
statistics/