Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/52afd7a57a09315bbdb96f32bb361f5373f39ec8content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 52afd7a57a09315bbdb96f32bb361f5373f39ec8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCATTGCCAGCACCAT-1036_C03, GCAAACCGTTGTCATC-1036_C03, AAGTGTTGTTACGCGG-1036_C03, GCATGAAAGAAAGCAT-1036_C03, GCCTTTATCCTAAATG-1036_C03 (top 5 of 6745 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
52afd7a57a09315bbdb96f32bb361f5373f39ec8.gz 2.73 GB 034125d0cc4b31ccd9a2fd4dd88fc449
52afd7a57a09315bbdb96f32bb361f5373f39ec8.gz.tbi 1.23 MB fd4ff056d9108ff25f8e5c7f2d0c1615
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB b00d744ceca2fa3afee4891b6bdbb744
statistics/