Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/556d7ee7e925c7b5a13b3535f1af1bcc150c95d6content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 556d7ee7e925c7b5a13b3535f1af1bcc150c95d6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCAGGCAAGCGAGCGA-2526_F01, CGTAATGGTGTTTCAC-2526_F01, CACGCTAAGTAGGCGG-2526_F01, TTTGTCCCACCTGGTG-2526_F01, CTTGGACCAACGTGCT-2526_F01 (top 5 of 2271 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
556d7ee7e925c7b5a13b3535f1af1bcc150c95d6.gz 1.01 GB b31905e5aa713ce3896015fc2952e73d
556d7ee7e925c7b5a13b3535f1af1bcc150c95d6.gz.tbi 788.96 KB 2634c9e4e689b7813f133f9b6c880c6b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 74bbc74082423f9d75227bb11b193d38
statistics/