Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/55893d95a1ca5a1f0479012080977721143d886ccontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 55893d95a1ca5a1f0479012080977721143d886c
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAGCCTAAGCGCCTTT-2309_A05, TGTGGCGGTGAATCGC-2309_A05, TGAGCTTAGCTGTAAC-2309_A05, AGCCTAAGTGGTGAGA-2309_A05, AAGTGTTGTGTTGCTT-2309_A05 (top 5 of 3232 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
55893d95a1ca5a1f0479012080977721143d886c.gz 2.04 GB 38f7b8858afc9b4d953f7b8c2f7ed92c
55893d95a1ca5a1f0479012080977721143d886c.gz.tbi 1.06 MB 26c5e2a601cbb55394831e4d893a0c6f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 810fe6737c8f659841b1b2f63f982eea
statistics/