Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5592d985f92f35cc036bc2afe2cf1e33048a96a5content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5592d985f92f35cc036bc2afe2cf1e33048a96a5
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CACATACAGCTTATGA-2526_B01, CGATGTCCAGCACGAA-2526_B01, TCGGTAAGTGATCAGC-2526_B01, GTGTTACAGACAAGTG-2526_B01, AATGAAGGTTGAGGTC-2526_B01 (top 5 of 2743 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
5592d985f92f35cc036bc2afe2cf1e33048a96a5.gz 1.38 GB 997fa9b4326eb962bffe5d5d56d8b9c1
5592d985f92f35cc036bc2afe2cf1e33048a96a5.gz.tbi 908.41 KB 1f4504240953c7c6df0c92b0efb7a9f5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB e81a3ad4b69e83a5cc301c6f2eec15d9
statistics/