Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/55cd6052b5639a1c00d78434c0603fa2ad61df23content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 55cd6052b5639a1c00d78434c0603fa2ad61df23
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATCCATAAGTCATTTC-1959_B02, AAGCGAGGTACCTTAC-1959_B02, AGCCAGTGTGCCGCAA-1959_B02, TCTTGACGTTAGACCA-1959_B02, CGTGTGTCAAATGCCC-1959_B02 (top 5 of 7108 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
55cd6052b5639a1c00d78434c0603fa2ad61df23.gz 2.14 GB 3d9f63733762b3da4ad3d2f242c7d4e8
55cd6052b5639a1c00d78434c0603fa2ad61df23.gz.tbi 1.08 MB fdffdb52cf6edb126da8c3babd5a0b15
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB d0227ad4b676a6eb57bf22bff5247da3
statistics/