Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/599da4d158ff8c9ee569d6494c11e5945ad30310content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 599da4d158ff8c9ee569d6494c11e5945ad30310
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGCGGTTTCTTAGTCT-2474_C05, GTATTGTCACCAACCG-2474_C05, TCGGTTCTCTAAGGTC-2474_C05, GGTTAGCGTTGCGCGA-2474_C05, GTACACCCAAATTCGT-2474_C05 (top 5 of 4909 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
599da4d158ff8c9ee569d6494c11e5945ad30310.gz 1.67 GB ef5db70b47d1ccb0981d5a37f285d672
599da4d158ff8c9ee569d6494c11e5945ad30310.gz.tbi 975.58 KB ca36f6ca722cd72f2d337e89ad6ed052
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 297fa919063174e1dff7c3d229eaf353
statistics/