Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAGCTCAAGGCCTAAT-930_F05, ATGTGAGAGTCCTTCA-930_F05, GGCTCAATCGATTTAG-930_F05, TGGAACAAGGTCGATT-930_F05, AGGCCCAGTCATGCCC-930_F05 (top 5 of 3754 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0.gz 2.2 GB 646a4447fba5472d041abaa5818a92bf
5bee8caa90a83a1e4f4fc8bb987ff54dcd8935b0.gz.tbi 1.08 MB a67e4772d43722b5c27858b82a6074a8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 294f28d0bcad848013d5e7c33a88c19e
statistics/