Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/5c617007c7f35281a27ac0a39e4bc01cd57ff121content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5c617007c7f35281a27ac0a39e4bc01cd57ff121
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGTTGCAAGTCCTGAG-2012_A05, TCTAGCACAATAGCCC-2012_A05, CGGTGAGAGCCACAAT-2012_A05, CGTGGTTCAGGAATCG-2012_A05, GTTTCAGCAAGGTGGC-2012_A05 (top 5 of 6607 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
5c617007c7f35281a27ac0a39e4bc01cd57ff121.gz 2.11 GB 1762aa4da68b564a606f02ebc3179cdb
5c617007c7f35281a27ac0a39e4bc01cd57ff121.gz.tbi 1.07 MB c3f4d4388829dcb7bc0fdaa70f412c83
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 6ac8e7968c4014684f4580107653344f
statistics/