Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/63a8f06d5fb7ddfdbd3541dd984c53fb208f902acontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 63a8f06d5fb7ddfdbd3541dd984c53fb208f902a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GAACCTGTCATTACAG-2016_C03, GCTCCTTAGCTTCTCA-2016_C03, GGTATTTCACGTAATT-2016_C03, GATAAAGGTGAGGTGA-2016_C03, TATGCATCACCAGGTT-2016_C03 (top 5 of 7211 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
63a8f06d5fb7ddfdbd3541dd984c53fb208f902a.gz 2.98 GB 4fce3a6fecb6a7b4be70ddb4d7ee1289
63a8f06d5fb7ddfdbd3541dd984c53fb208f902a.gz.tbi 1.32 MB ea59112b7f0aad663ea3ed49fb60f9d1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 6b9ee8f7231cd869d7f928fe857d3eec
statistics/