Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/6765d31b99973b55c17fea0e500e8f5302f8b588content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 6765d31b99973b55c17fea0e500e8f5302f8b588
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCTATAGGTTGAAGCC-1482_A03, CACGCTAAGCGAGGTG-1482_A03, ATTTAGCCAAGCCAGA-1482_A03, CATTGTGCATTGCAGC-1482_A03, ATCGGCCAGGGTCTAT-1482_A03 (top 5 of 3643 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
6765d31b99973b55c17fea0e500e8f5302f8b588.gz 1.03 GB 1222810b9c37a974cd147e64d4a2f124
6765d31b99973b55c17fea0e500e8f5302f8b588.gz.tbi 783.59 KB 25d581e5634016208d54a560a80aa1e6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 2d24b582eb6793e3f78daf15f4542022
statistics/