Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/6ecd93aef1dfb54ed23aac8e8323e292f384c288content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 6ecd93aef1dfb54ed23aac8e8323e292f384c288
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GAACCAGCATAGGCGA-2346_B06, GTGTGCGGTTGCGCGA-2346_B06, CTTAAGGGTGGTTCTT-2346_B06, GATTGCGTCGCAACAT-2346_B06, AGCCAGTGTCCTAATC-2346_B06 (top 5 of 4856 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
6ecd93aef1dfb54ed23aac8e8323e292f384c288.gz 1.56 GB 03ed0f576a70a3b99a41ad68e4fc1ba1
6ecd93aef1dfb54ed23aac8e8323e292f384c288.gz.tbi 955.79 KB 44abee26392e2cd1be707823b0d67421
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB c92547a855d9f5492d5c669c8319f0ba
statistics/