Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/71bb56f1ddc254728b61ba05c0749ecc582f889bcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 71bb56f1ddc254728b61ba05c0749ecc582f889b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AAGCTTGGTGCTGGTG-2306_C02, GTGAGGAGTTCGCTTG-2306_C02, ACCAGGCTCCTTAAGA-2306_C02, TGTGCGGGTTCCTGTG-2306_C02, TGAGCCGGTCCTAAGA-2306_C02 (top 5 of 3637 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
71bb56f1ddc254728b61ba05c0749ecc582f889b.gz 1.73 GB 8fdc3e778a7d538bf2a7025b6565d437
71bb56f1ddc254728b61ba05c0749ecc582f889b.gz.tbi 999.0 KB bec00c0d5c3bb1e8d7412f86bb875aae
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 431f1a726c462b708b199f6f5bb03e16
statistics/