Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/750e66e4ed5a4c993cf784c580fcc4dd10ee2d39content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 750e66e4ed5a4c993cf784c580fcc4dd10ee2d39
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACACTTAAGTCCTGAG-2012_B05, TCAGTAGGTTTATGGG-2012_B05, ATCAGGTTCCGCCAAA-2012_B05, AGCTTAATCATAACCA-2012_B05, TGCCATTGTTCCTGTG-2012_B05 (top 5 of 5333 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
750e66e4ed5a4c993cf784c580fcc4dd10ee2d39.gz 1.4 GB ab6b350cc5edb361abc76548c2ece8a7
750e66e4ed5a4c993cf784c580fcc4dd10ee2d39.gz.tbi 902.14 KB e0c9808420eab0485a22af51ba50bd47
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB b70b8a3945515fc406cc27d2c9cb26b7
statistics/