Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/77242589878160aaa41005b930498b92f057eddfcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 77242589878160aaa41005b930498b92f057eddf
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTTGACCGTTCGCTTG-2474_A05, ACGTTACAGACAGGCG-2474_A05, TGTGCGCAGTAACGAG-2474_A05, CATCCTCAGGCATGAA-2474_A05, CAAACCGTCAATGACC-2474_A05 (top 5 of 4020 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
77242589878160aaa41005b930498b92f057eddf.gz 2.27 GB 56eba872a97a78629a5334e1e9b5cd4d
77242589878160aaa41005b930498b92f057eddf.gz.tbi 1.11 MB 7ba867ab1d80e5016a8dc9499535e0d2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 7e4267f3367d3fb82559e4ea846a00e3
statistics/