Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/776e9fc7bbd0612f07f803a4998445036c4f2425content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 776e9fc7bbd0612f07f803a4998445036c4f2425
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGCTATTAGCACGATT-2283_A08, ACGAATCTCCTAAATG-2283_A08, AGGATTGAGCGCCTTT-2283_A08, ACAGGTAAGGCTACAT-2283_A08, TGTTACTTCTCACTAT-2283_A08 (top 5 of 4739 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
776e9fc7bbd0612f07f803a4998445036c4f2425.gz 2.46 GB d841db42cbaaab629bb2c0a684159c37
776e9fc7bbd0612f07f803a4998445036c4f2425.gz.tbi 1.19 MB a98e34e60f9c61e20b71c314afd0bd81
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB cd108ff65507330b7fa16bc52fd2711d
statistics/