Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/7880de83fcc27ca64b60593dc9f6079a498a20e6content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 7880de83fcc27ca64b60593dc9f6079a498a20e6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTTCTAAGTTTACGTC-1955_B06, GTGAGCGAGTCAATCA-1955_B06, GTGCGGTTCGTAATCA-1955_B06, ATCACCCTCTCCATGC-1955_B06, CTGAAACTCATGGTTA-1955_B06 (top 5 of 9264 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
7880de83fcc27ca64b60593dc9f6079a498a20e6.gz 2.93 GB f3d72859db2306e90c2f58699395e496
7880de83fcc27ca64b60593dc9f6079a498a20e6.gz.tbi 1.29 MB 82824c00d418bf811064703d556ca129
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 9d7f9fd8e1cb1451649beb4dd44164e9
statistics/