Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGCATTTGTTTCAGGA-1036_A03, GTGAACAAGGAGCACG-1036_A03, AGAAGGTGTCCCGGAA-1036_A03, GAGGTAGGTAATAGCT-1036_A03, AAGCGTTTCTTGGACG-1036_A03 (top 5 of 6749 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4.gz 2.36 GB ae9064e877b783e707dde82b5b25ff2b
7a85f3f5d2a9e35bd359b89785ddc9f4982da0c4.gz.tbi 1.15 MB ae6269fbedc8a5844b11f7cf120d33a6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 19dd169c0198253d02cb8750bec679b0
statistics/