Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/7c9edd2e40a96a57a38dfd8e5163b2febc6c7b1econtent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 7c9edd2e40a96a57a38dfd8e5163b2febc6c7b1e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AATTACCCACTAAGCC-822_A01, ACTGAAACAAGGGTTG-822_A01, CGCATGATCGTGCCTT-822_A01, CGCAAATTCAATGTCA-822_A01, ATTTGTGAGTGTTGCG-822_A01 (top 5 of 7448 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
7c9edd2e40a96a57a38dfd8e5163b2febc6c7b1e.gz 2.42 GB 4db57f16b061a1fe60a17127ce0e7172
7c9edd2e40a96a57a38dfd8e5163b2febc6c7b1e.gz.tbi 1.16 MB 44f5e84af0385ecec7ca2b008391dbfc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB ae81955605a9ec9fd097df0a902c762f
statistics/