Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/84184d0cd1564b0301b4cbaeba3a294ca47316f4content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 84184d0cd1564b0301b4cbaeba3a294ca47316f4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTTCCTGAGGGACTAA-2531_1_D03, GCAATGAAGCTCCCTG-2531_1_D03, AATACCGGTGAGCAAG-2531_1_D03, ATCCATAAGCCTCTGT-2531_1_D03, TCGATTAAGGGCTTTG-2531_1_D03 (top 5 of 1923 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
84184d0cd1564b0301b4cbaeba3a294ca47316f4.gz 1.14 GB 6e69c1b8bf55f4dcfc54aedda6d3b018
84184d0cd1564b0301b4cbaeba3a294ca47316f4.gz.tbi 839.89 KB 312a5a8dd921177350bb275b96851539
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 72fbaca029b7a41af0cced7524e7e1ac
statistics/