Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/84f34d886129cd140cbe2f8676c0af44850a4712content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 84f34d886129cd140cbe2f8676c0af44850a4712
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGAACAAAGTAACGGA-2278_A05, AGTGTTTCAGCTAATT-2278_A05, GTGTTACAGCACTAGT-2278_A05, CCTCAATGTGTCACGG-2278_A05, CTCCGGACATCGCTTT-2278_A05 (top 5 of 3370 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
84f34d886129cd140cbe2f8676c0af44850a4712.gz 2.34 GB e60fec892503115a70707d8852fd4df5
84f34d886129cd140cbe2f8676c0af44850a4712.gz.tbi 1.15 MB 4901bfed62244fc311be17760a7c9db0
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 432ac7aa8e1942a2ddb487a7facaa64e
statistics/