Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/859ffa9a1d6f56eb9abcfb29d22e09288625b343content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 859ffa9a1d6f56eb9abcfb29d22e09288625b343
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTAGGTGCAGGCCAAA-2447_C06, AAACCGGCAGGTTACC-2447_C06, AATTAGCGTGGGTACT-2447_C06, CCGACAGGTGTTGTGA-2447_C06, AGACAATAGTGAGGGT-2447_C06 (top 5 of 5461 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
859ffa9a1d6f56eb9abcfb29d22e09288625b343.gz 2.2 GB ed65c062d7f8bdcce5cc4c1551aa5ed7
859ffa9a1d6f56eb9abcfb29d22e09288625b343.gz.tbi 1.11 MB 0ae5dcc8c108437df952d0e88bf2ea29
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 34b09d77b9a65fdf006f702450961269
statistics/