Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/85d715868b7663a866d320b2e88f965d5c36b58acontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 85d715868b7663a866d320b2e88f965d5c36b58a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TACTCAAAGTAGCGGG-1042_B06, TGTGGAGCAGCTCATA-1042_B06, GGCAGGATCATTCATC-1042_B06, GGAGGTTAGCGGATAA-1042_B06, CTCAATAAGTAACCCG-1042_B06 (top 5 of 4855 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
85d715868b7663a866d320b2e88f965d5c36b58a.gz 2.6 GB f2328d21ec4fa9a2ef751b7921b498b8
85d715868b7663a866d320b2e88f965d5c36b58a.gz.tbi 1.2 MB fc956e01faf0667aa4659db407bf2823
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 2a6974ba6400c3eb604273f0cd6d7bbb
statistics/