Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/951ba259cc775f3550b4556169d06c6b8eb91afecontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 951ba259cc775f3550b4556169d06c6b8eb91afe
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AACCTTGCACGAATTT-2278_C05, GCCTGACAGGGATGAC-2278_C05, CCTGGATCACGGTTTA-2278_C05, CTAGTAGGTTTCCTCC-2278_C05, ATTACTGAGTACCGCA-2278_C05 (top 5 of 4992 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
951ba259cc775f3550b4556169d06c6b8eb91afe.gz 2.52 GB d273a0580dbec1782e09598447317a1c
951ba259cc775f3550b4556169d06c6b8eb91afe.gz.tbi 1.21 MB 095337887adaf84897390f3df0d1d24c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB e88a0b27259679d2bf4b20583d4996d7
statistics/