Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/98123d9e5e7a10180d2694f55c4f538179489b6econtent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 98123d9e5e7a10180d2694f55c4f538179489b6e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TATTAGGTCCCTCAGT-2540_A02, TGTAACTCAAGGTCCT-2540_A02, GTAGGCGAGCGCAATT-2540_A02, TGCTAGCCAGTTAAAG-2540_A02, TCATGAGGTCAAGTGC-2540_A02 (top 5 of 3495 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
98123d9e5e7a10180d2694f55c4f538179489b6e.gz 1.66 GB b9c5cd047e6eeb6d766242bdef783900
98123d9e5e7a10180d2694f55c4f538179489b6e.gz.tbi 991.23 KB da266d765fa899e2a33d0843ef8e872b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB c76e276fbbfaf499fece7199368f9032
statistics/