Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/9cd08865b2655622f88cc505022438efb76d620econtent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 9cd08865b2655622f88cc505022438efb76d620e
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGGTAACGTTACTTCA-858_D03, ACGGTTAGTGTCACGG-858_D03, ACCTTGCTCACAGACT-858_D03, GAGCTGCTCTCGCCTG-858_D03, CTATTCAGTTTATTCG-858_D03 (top 5 of 4385 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
9cd08865b2655622f88cc505022438efb76d620e.gz 1.83 GB e05cb385f1ddebab9fc888d8dcf91a53
9cd08865b2655622f88cc505022438efb76d620e.gz.tbi 1.01 MB 5f29c409f1d34bec7357f8cada525de4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 62111e71b8dd088c6256da9f67efafeb
statistics/