Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a2fc5db093363b30281313e4b07167c34a45640fcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a2fc5db093363b30281313e4b07167c34a45640f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTAGGAGTAACCACA-2013_A01, GTGTTACAGTGAGAGC-2013_A01, GTCTAATCATCACTTC-2013_A01, CCCGCAACACAGACTC-2013_A01, GATTAGTGTCTTGCAT-2013_A01 (top 5 of 5009 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
a2fc5db093363b30281313e4b07167c34a45640f.gz 1.78 GB 8a993fd4cc282d8f99ca40d601a040b1
a2fc5db093363b30281313e4b07167c34a45640f.gz.tbi 1014.46 KB 1402172f64c672c03fd42719573e1060
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 5398f798dfe5058cc004b1376cb99507
statistics/