Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a3436b78cea0734f2e9eb4b94e7147ce6e2bc598content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a3436b78cea0734f2e9eb4b94e7147ce6e2bc598
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTCGGTTCGGGCCAT-2016_A03, CTTGCATGTTGTAAAC-2016_A03, TTTACGCGTTGGTGAC-2016_A03, AGCAAGGGTTCACTGT-2016_A03, CTGACCAAGGCCTTAG-2016_A03 (top 5 of 5633 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
a3436b78cea0734f2e9eb4b94e7147ce6e2bc598.gz 1.37 GB 100ee3dcb829034d2d28750553d8f625
a3436b78cea0734f2e9eb4b94e7147ce6e2bc598.gz.tbi 886.07 KB c9ee2af89edac3f2dfb80bcfd275d306
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB a6edba38eb1237ad318f92ca8afae72a
statistics/