Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a3aa68f149920e743bbf1064298870a65debb845content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a3aa68f149920e743bbf1064298870a65debb845
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGGTCAAAGGTGTCCA-1468_A09, AGTAACGAGACAGGCG-1468_A09, TTCGTTAGTTCGCTTG-1468_A09, TTGAGGCGTCATTAGG-1468_A09, CTTAAGGGTGTAACCA-1468_A09 (top 5 of 2477 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
a3aa68f149920e743bbf1064298870a65debb845.gz 585.54 MB ca26f082b34cb4dc3cf5ebeb037252dc
a3aa68f149920e743bbf1064298870a65debb845.gz.tbi 654.51 KB 58922e6a123e6c18d767ebee0663c524
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB db2d25be0524a4a480560686455e1bc5
statistics/