Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a49bfd8e08762c838f5e42de772dd3f84f4457aacontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a49bfd8e08762c838f5e42de772dd3f84f4457aa
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTAGGCGAGTCTTGAA-2495_1_D08, ATGTGAGAGCCGCAGT-2495_1_D08, ATGCAAACAGTTAAAG-2495_1_D08, AGTAATGCATAGGCGA-2495_1_D08, AGGTTAACAAGGTACG-2495_1_D08 (top 5 of 4154 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
a49bfd8e08762c838f5e42de772dd3f84f4457aa.gz 2.31 GB f70fc5d52b48e5bc1cf1580b9128c714
a49bfd8e08762c838f5e42de772dd3f84f4457aa.gz.tbi 1.12 MB 301bae52bb3c2e8a2a0b24be0bb44b6d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 00601af526290bdd2bcd41b1a39a698d
statistics/