Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a5092558a0a051311788e8eab4846178f08b9ffdcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a5092558a0a051311788e8eab4846178f08b9ffd
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCCCATAAGGAGCAAC-2372_B04, GACTAATGTGTGTCCC-2372_B04, CCACACAAGGTCCGTA-2372_B04, ATCACTAAGGAATAAC-2372_B04, CGAAGCGAGTATTGGC-2372_B04 (top 5 of 3018 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
a5092558a0a051311788e8eab4846178f08b9ffd.gz 1.6 GB 25048b86ad2933be9d7eb64595acc135
a5092558a0a051311788e8eab4846178f08b9ffd.gz.tbi 964.21 KB 5790a9683e3f881efa1c78afa41a9111
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB b64788362cef1d3940fa53f632045820
statistics/