Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/a9bbfeeac0d7cb34a8ddd220e1cb2be1de62d177content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a9bbfeeac0d7cb34a8ddd220e1cb2be1de62d177
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACCTGGATCGAAGTAG-2435_E06, GGCTTAAGTTGTAAAC-2435_E06, TTGTTGTTCATCAGTA-2435_E06, TTTGTGAAGCTCGCTT-2435_E06, ACCTAAGGTTTACTTG-2435_E06 (top 5 of 1610 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
a9bbfeeac0d7cb34a8ddd220e1cb2be1de62d177.gz 837.8 MB 772db01daa209f0e77ddfb75895138e6
a9bbfeeac0d7cb34a8ddd220e1cb2be1de62d177.gz.tbi 729.75 KB 83308ad4e851e1fbd18d79fd0db0e4f1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB d9be04028e61c59db096c28ede17033d
statistics/