Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/ab47bd36ff91bb14fb127fd86860d0a4e41f5b91content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: ab47bd36ff91bb14fb127fd86860d0a4e41f5b91
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGTAGCGGTTTGGGTA-2328_C03, ACAGCGCTCTAAGTCA-2328_C03, TTAGTCAAGTCATTTC-2328_C03, GAAGGATGTGAAGCCT-2328_C03, AAGTAGCCAAGGAATC-2328_C03 (top 5 of 4424 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
ab47bd36ff91bb14fb127fd86860d0a4e41f5b91.gz 1.78 GB 9b257dc524e1afd8f20a66c06932649e
ab47bd36ff91bb14fb127fd86860d0a4e41f5b91.gz.tbi 1019.13 KB c6c4a26312865dcf3458074667338e3a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 5cdf4fbc984cca5df4eef202963668b5
statistics/