Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/afb4679ffa44415f2ff2ad4b4f74a544f89481d9content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: afb4679ffa44415f2ff2ad4b4f74a544f89481d9
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTAGGAGTCACAGCG-2468_F02, AAAGGTTAGAATGACG-2468_F02, GATTGCGTCGGCCATA-2468_F02, CCATAAATCCTTCTAG-2468_F02, TCAGTAGGTACCGAAC-2468_F02 (top 5 of 2803 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
afb4679ffa44415f2ff2ad4b4f74a544f89481d9.gz 1.47 GB fe4d0a371d8dbc8683e3767006e6145e
afb4679ffa44415f2ff2ad4b4f74a544f89481d9.gz.tbi 926.17 KB 1c9e9c90d8fadd8af54f22ecb77f5adb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB b6aed67c5bf26aee507fbcb907d74601
statistics/