Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b05ad8d2d29b0bc08241c6ac829d04aa2321ba3dcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b05ad8d2d29b0bc08241c6ac829d04aa2321ba3d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCGCATTGTGAGCACT-2058_C03, TTGAGGCGTGCTGTAA-2058_C03, CGTGAGGAGACAAACG-2058_C03, GGTTGGTGTTCACCCA-2058_C03, ACCTTCATCATCACTT-2058_C03 (top 5 of 3988 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
b05ad8d2d29b0bc08241c6ac829d04aa2321ba3d.gz 927.31 MB 65bbdc3f3353fe8beedfc1c829bd32cb
b05ad8d2d29b0bc08241c6ac829d04aa2321ba3d.gz.tbi 751.73 KB 87d90310a31ffeaf7ab6f98c6890c4eb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB f29f218195fbc10a315fdaa96b4f7738
statistics/