Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b1fe7a366b129f44f0b9930c1179622f6beb7011content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b1fe7a366b129f44f0b9930c1179622f6beb7011
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGCCAGTGTACCGTTT-2289_E04, CTGCTCCCATGAATCT-2289_E04, GCCCATAAGCACAGGG-2289_E04, TTGAGCTAGAGGCTAA-2289_E04, TCATTGCGTATTGTCC-2289_E04 (top 5 of 5483 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
b1fe7a366b129f44f0b9930c1179622f6beb7011.gz 2.88 GB db9995afba9acddeb72b3d0e29bd5a4f
b1fe7a366b129f44f0b9930c1179622f6beb7011.gz.tbi 1.28 MB 84f71bb1a9ba026d825df179492c3eaa
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB a72f824ab5634991adcd764818a8be0a
statistics/