Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b54d70460e37d81d44164361a342a40835bee806content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b54d70460e37d81d44164361a342a40835bee806
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTCTTGAGCAAGACA-2414_E01, TTGTTGTTCCAATTAG-2414_E01, AAGACATAGTTGTCAA-2414_E01, ACTTATCTCAGTTCCC-2414_E01, ACCAATATCAGCAAAG-2414_E01 (top 5 of 1601 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
b54d70460e37d81d44164361a342a40835bee806.gz 804.91 MB 7298b0471d093517ab66e5154e4c3b5b
b54d70460e37d81d44164361a342a40835bee806.gz.tbi 720.65 KB f5b6ffe7bcfa39ccc9f36770ec237646
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB e00e877cfdffa707af8d8b12a417ee8c
statistics/