Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b61002d5b6867a7eb2a36feaf1cbc0e522d57739content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b61002d5b6867a7eb2a36feaf1cbc0e522d57739
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTTTAGGCAGCATGAG-2012_C05, GAGCTTAGTGGACATC-2012_C05, CTGGATGTCCCATAGG-2012_C05, GGGTTTCCAGCTCAAC-2012_C05, CCGTTTGGTATTGAGT-2012_C05 (top 5 of 5421 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
b61002d5b6867a7eb2a36feaf1cbc0e522d57739.gz 2.09 GB ea77994c64da7f6b9704a155a3c5e3f7
b61002d5b6867a7eb2a36feaf1cbc0e522d57739.gz.tbi 1.08 MB 61a490ae00603518d4c3b7634cc4afeb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB a5a26bed7df8e87bfebeebadca2c8277
statistics/