Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAGGGCTTCCACCCTG-2263_C01, TTAGGCTAGGCGGGTA-2263_C01, AGGAAACGTTTGGGTA-2263_C01, GAGGTTAAGCTCATAA-2263_C01, TCAGCCTTCGTTTCCA-2263_C01 (top 5 of 3833 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074.gz 1.41 GB 3baa4d1a4edf42b01b289b9258d4cd81
b81b8dba1caf0524bbdc75a4f6f7ab0dd8257074.gz.tbi 895.0 KB 820d89546748ee35715d8c7daf0f3be7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB d5219d268375b573a5646c673df945e4
statistics/