Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/bc3dee6891a1fd1b0e5f9913fd283b872cbfd056content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: bc3dee6891a1fd1b0e5f9913fd283b872cbfd056
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGGCTATAGCTGGACC-2471_C04, GCAAGTGCAACAGCCT-2471_C04, GAGGTGAGTCATGCCC-2471_C04, ATTTGCAAGTTGGCCA-2471_C04, GGTGAGGTCAGGCCTA-2471_C04 (top 5 of 4373 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
bc3dee6891a1fd1b0e5f9913fd283b872cbfd056.gz 1.92 GB 120670c47da43aa67c87160250d517d3
bc3dee6891a1fd1b0e5f9913fd283b872cbfd056.gz.tbi 1.03 MB 816df8b16afffd1f73e95078cf68eeb7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 6a3eadb71f22607475cbe44355d8676d
statistics/