Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/beda748f983d3a18484a0930f955bbec66f3c34bcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: beda748f983d3a18484a0930f955bbec66f3c34b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGTCAGGCAATATACC-2271_C08, CAGATTCAGCGAGGTG-2271_C08, GGTACTAGTTATCCGT-2271_C08, TCTAGCGAGACAACGA-2271_C08, GATGGACAGAGGAGGA-2271_C08 (top 5 of 4144 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
beda748f983d3a18484a0930f955bbec66f3c34b.gz 2.14 GB c840c963755b49f38ebe09cf5bacb5b6
beda748f983d3a18484a0930f955bbec66f3c34b.gz.tbi 1.09 MB 69f108cf6ea3ebb1bdcc0390402c58fa
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 8cb47ef2597165325cfa788fcec67515
statistics/