Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/bf3e2e07524b2d2fdcb2268f723718390ecd8443content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: bf3e2e07524b2d2fdcb2268f723718390ecd8443
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTCTATGCAGGCGAGT-2474_B05, CACTTAAAGACTATTG-2474_B05, GCTGTGATCAGAAACG-2474_B05, TCAGGTCCAGGCAAGC-2474_B05, AGTGTGGCACCTGTAA-2474_B05 (top 5 of 4090 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
bf3e2e07524b2d2fdcb2268f723718390ecd8443.gz 1.34 GB 8ebe21479faf448e3edbc11678ac7867
bf3e2e07524b2d2fdcb2268f723718390ecd8443.gz.tbi 877.62 KB 40d4d5d81a77453302448a49efa233a6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 1c5c1220be3eb4fb5ba85e59d35ef97e
statistics/