Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/c0ddc979be4e81a7d8a016f0e85b2d1db1f76a40content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: c0ddc979be4e81a7d8a016f0e85b2d1db1f76a40
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTCGGTTCGTTTCGC-2513_C04, CGTGTGTCATGCTTAG-2513_C04, CCCGTAAAGAGAAGGG-2513_C04, TCATGTTTCTTGCAGG-2513_C04, GTGAGGAGTGTTGCTT-2513_C04 (top 5 of 4126 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
c0ddc979be4e81a7d8a016f0e85b2d1db1f76a40.gz 1.83 GB 1ac8b461fcc76445f49906e3f82d9a95
c0ddc979be4e81a7d8a016f0e85b2d1db1f76a40.gz.tbi 1.03 MB 21b98e35946076345d3586ab2edef3b1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 695714a19f0efb2b30f6a6ff52651aa6
statistics/