Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/c8ef9f604a1f521e81fff7c2734fff38e2961c99content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: c8ef9f604a1f521e81fff7c2734fff38e2961c99
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGTAAACAGGTCGAGG-2526_D01, CGGCTCACAGAGGGAG-2526_D01, GGCCTAATCCTAGTTT-2526_D01, GTTTGTTTCTTAGCGG-2526_D01, TACAATGTCCATCAGG-2526_D01 (top 5 of 3594 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
c8ef9f604a1f521e81fff7c2734fff38e2961c99.gz 1.31 GB 48aa9f38cb36a28f3a5d65924adf43b9
c8ef9f604a1f521e81fff7c2734fff38e2961c99.gz.tbi 878.49 KB 20f0d81a78e8ded6027a606755a07035
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 7873fb75a0d5f1897a1a836d224a1071
statistics/